Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments

Cancer subtype classification and modeling by pathway attention and propagation

Tools for Integrating Heterogenous Multiple Time-series Data to Investigate Stress Response Gene and Signaling

MIning Differentially Activated Subpaths of KEGG pathways from multi-class RNA-seq data

Web based TCGA Omics Data Mapping System on KEGG pathways

In Silico experiment with three-level network Tool for User given Hypothesis of KO mouse
The online instant hypothesis web analyzer in slilico experiment tool.

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RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.

Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways

A vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes

Context-MMIA is miRNA - mRNA target prediction system combining expression data and literature data.

ContextTRAP is novel approach for prioritizing pathways by utilizing both results from pathway analysis tools and the literature information.

Time-series RNA-seq Analysis Package

Identifying DEGs in multiclass RNA-seq data

A novel computational method to measure spliceome level intra-tumor heterogeneity (sITH) in breast cancer