Sangsoo Lim

Contact

sslim@snu.ac.kr

International Papers

  • Yi J, Lee S, Lim S, Cho C, Piao Y, Yeo M, Kim D, Kim S, Lee S. Exploring chemical space for lead identification by propagating on chemical similarity network. Computational and Structural Biotechnology Journal. 2023 Aug 25.
  • Bang D, Lim S, Lee S, Kim S. Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers. Nature Communications. 2023 June 15.
  • Lim S, Kim Y, Gu J, Lee S, Shin W, Kim S. Supervised chemical graph mining improves drug-induced liver injury prediction. iScience. 2023 Jan 20.
  • Lim S, Lee S, Piao Y, Choi MG, Bang D, Gu J, Kim S. On Modeling and Utilizing Chemical Compound Information with Deep Learning Technologies: A Task-oriented Approach. Computational and Structural Biotechnology Journal (CSBJ). 2022 Aug 4.
  • Lee G, Kim Y, Jang H, Han JS, Nahn N, Park YJ, Han SM, Cho C, Lim S, Noh JR, Oh WK, Lee CH, Kim S, Kim JB. SREBP1c-PARP1 axis tunes anti-senescence activity of adipocytes and ameliorates metabolic imbalance in obesity. Cell Metabolism. 2022 May 3.
  • Kim J, Lim S, Lee S, Cho C, Kim S. Embedding of FDA Approved Drugs in Chemical Space Using Cascade Autoencoder with Metric Learning. IEEE BigComp 2022. AI-BioHealth 2022 workshop. 2022 Jan 17.
  • Kim M, Lee S, Lim S, Lee DY, Kim S. Subnetwork Representation Learning for Discovering Network Biomarkers in Predicting Lymph Node Metastasis in Early Oral Cancer. Scientific Reports 11 (23992), 1-12. 2021 Dec 14.
  • Sohn JH, Ji Y, Cho CY, Nahmgoong H, Lim S, Jeon YG, Han SM, Han JS, Park I, Rhee HW, Kim S, Kim JB. Spatial Regulation of Reactive Oxygen Species via G6PD in Brown Adipocytes Supports Thermogenic Function. Diabetes. 2021 Sep 14.
  • Jung I, Kim M, Rhee S, Lim S, Kim S. MONTI: A Multi-Omics Non-negative Tensor Decomposition Framework for Gene-Level Integrative Analysis. Frontiers in Genetics, 2021 Sep 10.
  • Park S, Lee D, Kim Y, Lim S, Chae H, Kim S. BioVLAB-Cancer-Pharmacogenomics: Tumor Heterogeneity and Pharmacogenomics Analysis of Multi-omics Data from Tumor on the Cloud. Bioinformatics. 2021 June 29.
  • Jeong D, Lim S, Lee S, Oh M, Cho C, Seong H, Jung W, Kim S. Construction of Condition-Specific Gene Regulatory Network using Kernel Canonical Correlation Analysis. Frontiers in Genetics. 2021 Mar 26.
  • Park YJ, Lee S, Lim S, Hahn N, Ji Y, Huh JY, Alfadda AA, Kim S, Kim JB. DNMT1 maintains metabolic fitness of adipocytes through acting as an epigenetic safeguard of mitochondrial dynamics. Proceedings of the National Academy of Sciences (PNAS). 2021 Mar 16.
  • Lim S, Lu Y, Cho CY, Sung I, Kim J, Kim Y, Park S, Kim S. A Review on Compound-Protein Interaction Prediction Methods: Data, Format, Representation and Model. Computational and Structural Biotechnology Journal (CSBJ). 2021 Mar 10.
  • Oh M, Park S, Lee S, Lee D, Lim S, Jeong D, Jo K, Jung I, Kim S. DRIM: A web-based system for investigating drug response at the molecular level by condition-specific multi-omics data integration. Frontiers in Genetics. 2020 Nov 12.
  • Lee S, Lim S, Lee T, Sung I, Kim S. Cancer subtype classification and modeling by pathway attention and propagation. Bioinformatics, 2020 Mar 24.
  • Kim M, Lee S, Lim S, Kim S. SpliceHetero: An information theoretic approach for measuring spliceomic intratumor heterogeneity from bulk tumor RNA-seq. PloS ONE. 2019 Oct 23.
  • Lim A, Lim S, Kim S. Enhancer Prediction with Histone Modification Marks Using a Hybrid Neural Network Model. Methods, 2019 Aug 15.
  • Moon JH, Lim S, Jo K, Lee S, Seo S, Kim S, PINTnet: construction of condition-specic pathway interaction network by computing shortest paths on weighted PPI. BMC Systems Biology. 2017 Mar 14.

Conference Papers

  • Rhee S, Lim S, Kim S, Iterative segmented least square method for functional microRNA-mRNA module discovery in breast cancer. 2016 IEEE International Conference On Bioinformatics and Biomedicine (BIBM 2016), Shenzhen, China